Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs17131417 | chr1:91848784 | A/G | 7.73E-6 | 490 | 17.77 | 17 | 15.67 | KM Plot |
| THCA | rs17131419 | chr1:91850970 | C/G | 7.89E-6 | 489 | 15.65 | 17 | 17.77 | KM Plot |
| THCA | rs17136316 | chr16:3366141 | C/T | 1.96E-7 | 490 | 16.8 | 15.93 | 15.8 | KM Plot |
| THCA | rs17143013 | chr7:120511670 | A/G | 2.63E-6 | 490 | 15.65 | 16.93 | 12.37 | KM Plot |
| THCA | rs17150812 | chr10:11793851 | T/C | 3.44E-5 | 487 | 16.07 | 14.9 | 12.7 | KM Plot |
| THCA | rs17150855 | chr10:11829174 | A/G | 3.84E-5 | 490 | 32.1 | 14.8 | 16.07 | KM Plot |
| THCA | rs17150863 | chr10:11831111 | A/G | 5.66E-5 | 483 | 16.13 | 14.8 | 23.67 | KM Plot |
| THCA | rs17151004 | chr11:87590842 | A/G | 0 | 490 | 9.82 | 16.13 | 15.93 | KM Plot |
| THCA | rs17157577 | chr11:62608918 | G/A | 7.55E-5 | 490 | 16.22 | 14.33 | 14.27 | KM Plot |
| THCA | rs17157578 | chr11:62608968 | G/C | 7.55E-5 | 488 | 16.27 | 14.33 | 14.27 | KM Plot |
| THCA | rs17164801 | chr7:129971365 | C/T | 9.49E-5 | 486 | 16.63 | 15.33 | 14.83 | KM Plot |
| THCA | rs17169453 | chr7:16436708 | T/C | 3.59E-9 | 480 | 15.15 | 17.73 | 17.77 | KM Plot |
| THCA | rs17197300 | chr5:65547128 | C/T | 4.96E-5 | 490 | 9 | 13.22 | 16.35 | KM Plot |
| THCA | rs17199679 | chr9:111593080 | A/G | 3.55E-5 | 490 | 16.97 | 14 | 11.05 | KM Plot |
| THCA | rs17216650 | chr3:56565861 | A/G | 5.44E-7 | 483 | 16.67 | 12.7 | 7.25 | KM Plot |